PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA025137-PA
Common NameOsI_24867
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 593aa    MW: 63932.9 Da    PI: 7.7193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA025137-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88e-18408454455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  BGIOSGA025137-PA 408 VHNLSERRRRDRINEKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 454
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.18E-16400458No hitNo description
SuperFamilySSF474592.62E-21402469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.768404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-15408454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-21408462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MKLLGTQDGP ASSRSRVRDV MLPRRDAPPP PPTSSLRALA ARVQARRRTY HCSSSPLWVG  60
SRRIVIVIEE PTALDKLKLT RSASEKTVLT LIRSTKSSPP LSNLDSRSRE AHRQCRLDLL  120
KRIHLTLLPR HSHFLSTSKR SKKNEVRSVK CDLPAVEELR RHGCGCNCKV VVVVGDDDEP  180
EEALAIGGFR SVCLRGVSSA WRAGGSSCGR HGGVVAHAQT RHRSSDVLAR SGVTGEEETA  240
SAWFADGGGG GGGDDDALGL GMGRDIYSQL WHSFANVDGH AAGALALATP TPTPRAAARS  300
DDVSSRLDEA DLSICGSNAV VAPALPADDD DDIDAAAPRE EEEEEEEGPG AARAAGASSS  360
GGSGSGSGSY PLFKRGREEL VDSLSEVADE TRPSKRPAAK RRTRAAEVHN LSERRRRDRI  420
NEKLRALQEL VPHCNKTDKA SILDEAIEYL KSLQMQVQIM WMTTGIVPMM FPGTHQLMPP  480
MGMGLNTACM PGAQAQGLNQ MQRTTYYMNN SLPNQMPQIP SPAMNAPSVP DDMQNDNRIR  540
GPRNPFLHCN DTLTATAQVP GLFTYGSQIA EQNEIQELLS GAVIPSSSDG TIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399416KRRTRAAEVHNLSERRRR
2412417ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.445160.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329702630.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4002760.0JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648043.10.0PREDICTED: transcription factor PIF4 isoform X1
RefseqXP_015648044.10.0PREDICTED: transcription factor PIF4 isoform X1
RefseqXP_015648045.10.0PREDICTED: transcription factor PIF4 isoform X1
TrEMBLB8B7650.0B8B765_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA025137-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-27phytochrome interacting factor 3